Francesco Gatto

Publikationer
Populärvetenskap och samverkan

Utvalda publikationer

Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2022;119(50):e2115328119

Noninvasive detection of any-stage cancer using free glycosaminoglycans.

Bratulic S; Limeta A; Dabestani S; Birgisson H; Enblad G; Stålberg K; Hesselager G; Häggman M; Höglund M; Simonson OE; Stålberg P; Lindman H; Bång-Rudenstam A; Ekstrand M; Kumar G; Cavarretta I; Alfano M; Pellegrino F; Mandel-Clausen T; Salanti A; Maccari F; Galeotti F; Volpi N; Daugaard M; Belting M; Lundstam S; Stierner U; Nyman J; Bergman B; Edqvist P-H; Levin M; Salonia A; Kjölhede H; Jonasch E; Nielsen J; Gatto F
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2022;298(2):101575

Analysis of normal levels of free glycosaminoglycans in urine and plasma in adults.

Bratulic S; Limeta A; Maccari F; Galeotti F; Volpi N; Levin M; Nielsen J; Gatto F
Article: EUROPEAN UROLOGY ONCOLOGY. 2018;1(5):364-377

Plasma Glycosaminoglycans as Diagnostic and Prognostic Biomarkers in Surgically Treated Renal Cell Carcinoma.

Gatto F; Blum KA; Hosseini SS; Ghanaat M; Kashan M; Maccari F; Galeotti F; Hsieh JJ; Volpi N; Hakimi AA; Nielsen J
Article: NATURE BIOTECHNOLOGY. 2018;36(3):272-281

Recon3D enables a three-dimensional view of gene variation in human metabolism.

Brunk E; Sahoo S; Zielinski DC; Altunkaya A; Dräger A; Mih N; Gatto F; Nilsson A; Preciat Gonzalez GA; Aurich MK; Prlić A; Sastry A; Danielsdottir AD; Heinken A; Noronha A; Rose PW; Burley SK; Fleming RMT; Nielsen J; Thiele I; Palsson BO
Article: CELL REPORTS. 2016;16(3):878-895

Systematic Analysis Reveals that Cancer Mutations Converge on Deregulated Metabolism of Arachidonate and Xenobiotics.

Gatto F; Schulze A; Nielsen J
Article: CELL REPORTS. 2016;15(8):1822-1836

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma.

Gatto F; Volpi N; Nilsson H; Nookaew I; Maruzzo M; Roma A; Johansson ME; Stierner U; Lundstam S; Basso U; Nielsen J
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(9):E866-E875

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma.

Gatto F; Nookaew I; Nielsen J

Artiklar

Article: BIOMOLECULES. 2023;13(3):532

Mucopolysaccharidoses Differential Diagnosis by Mass Spectrometry-Based Analysis of Urine Free Glycosaminoglycans-A Diagnostic Prediction Model.

D'Avanzo F; Zanetti A; Dardis A; Scarpa M; Volpi N; Gatto F; Tomanin R
Article: JCO PRECISION ONCOLOGY. 2023;7:e2200361

Plasma and Urine Free Glycosaminoglycans as Monitoring and Predictive Biomarkers in Metastatic Renal Cell Carcinoma: A Prospective Cohort Study.

Gatto F; Bratulic S; Jonasch E; Limeta A; Maccari F; Galeotti F; Volpi N; Lundstam S; Nielsen J; Stierner U
Journal article: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 2023;21:3912-3919

Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors.

Limeta A; Gatto F; Herrgård MJ; Ji B; Nielsen J
Article: HEALTHCARE. 2022;10(9):1714

Accelerating the Development and Validation of Liquid Biopsy for Early Cancer Screening and Treatment Tailoring.

Horgan D; Čufer T; Gatto F; Lugowska I; Verbanac D; Carvalho Â; Lal JA; Kozaric M; Toomey S; Ivanov HY; Longshore J; Malapelle U; Hasenleithner S; Hofman P; Alix-Panabières C
Article: EUROPEAN UROLOGY OPEN SCIENCE. 2022;42:30-39

Plasma and Urine Free Glycosaminoglycans as Monitoring Biomarkers in Nonmetastatic Renal Cell Carcinoma-A Prospective Cohort Study.

Gatto F; Dabestani S; Bratulic S; Limeta A; Maccari F; Galeotti F; Volpi N; Stierner U; Nielsen J; Lundstam S
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2021;297(6):101391

The specificity of the malarial VAR2CSA protein for chondroitin sulfate depends on 4-O-sulfation and ligand accessibility.

Spliid CB; Toledo AG; Sanderson P; Mao Y; Gatto F; Gustavsson T; Choudhary S; Saldanha AL; Vogelsang RP; Gögenur I; Theander TG; Leach FE; Amster IJ; Esko JD; Salanti A; Clausen TM
Journal article: REGENERATIVE ENGINEERING AND TRANSLATIONAL MEDICINE. 2021;7(3):312-352

The Translational Status of Cancer Liquid Biopsies

Bratulic S; Gatto F; Nielsen J
Article: JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2021;1177:122761

Analytical performance of a standardized kit for mass spectrometry-based measurements of human glycosaminoglycans.

Tamburro D; Bratulic S; Abou Shameh S; Soni NK; Bacconi A; Maccari F; Galeotti F; Mattsson K; Volpi N; Nielsen J; Gatto F
Article: JCI INSIGHT. 2020;5(23):140940

Meta-analysis of the gut microbiota in predicting response to cancer immunotherapy in metastatic melanoma.

Limeta A; Ji B; Levin M; Gatto F; Nielsen J
Article: NATURE COMMUNICATIONS. 2020;11(1):3811

Purine metabolism regulates DNA repair and therapy resistance in glioblastoma.

Zhou W; Yao Y; Scott AJ; Wilder-Romans K; Dresser JJ; Werner CK; Sun H; Pratt D; Sajjakulnukit P; Zhao SG; Davis M; Nelson BS; Halbrook CJ; Zhang L; Gatto F; Umemura Y; Walker AK; Kachman M; Sarkaria JN; Xiong J; Morgan MA; Rehemtualla A; Castro MG; Lowenstein P; Chandrasekaran S; Lawrence TS; Lyssiotis CA; Wahl DR
Article: ISCIENCE. 2020;23(4):100978

Exercise-Mediated Lowering of Glutamine Availability Suppresses Tumor Growth and Attenuates Muscle Wasting.

Pedersen KS; Gatto F; Zerahn B; Nielsen J; Pedersen BK; Hojman P; Gehl J
Article: CELL DEATH DISCOVERY. 2020;6:65

A simple method for detecting oncofetal chondroitin sulfate glycosaminoglycans in bladder cancer urine.

Clausen TM; Kumar G; Ibsen EK; Ørum-Madsen MS; Hurtado-Coll A; Gustavsson T; Agerbæk MØ; Gatto F; Todenhöfer T; Basso U; Knowles MA; Sanchez-Carbayo M; Salanti A; Black PC; Daugaard M
Article: METABOLIC ENGINEERING. 2020;57:51-62

Pan-cancer analysis of the metabolic reaction network.

Gatto F; Ferreira R; Nielsen J
Article: FEBS LETTERS. 2017;591(20):3288-3295

Exploiting off-targeting in guide-RNAs for CRISPR systems for simultaneous editing of multiple genes.

Ferreira R; Gatto F; Nielsen J
Article: CELL SYSTEMS. 2017;4(5):495-504.e5

Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast.

Lahtvee P-J; Sánchez BJ; Smialowska A; Kasvandik S; Elsemman IE; Gatto F; Nielsen J
Article: NPJ SYSTEMS BIOLOGY AND APPLICATIONS. 2017;3:22

Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome.

Feizi A; Gatto F; Uhlen M; Nielsen J
Journal article: JOURNAL OF SUPERCRITICAL FLUIDS. 2016;116:57-61

Microbial inactivation of paprika using oregano essential oil combined with high-pressure CO₂

Casas J; Tello J; Gatto F; Calvo L
Article: JOURNAL OF HEMATOLOGY & ONCOLOGY. 2016;9:15

Systematic analysis of overall survival and interactions between tumor mutations and drug treatment.

Gatto F; Nielsen J
Article: FRONTIERS IN ONCOLOGY. 2016;6:253

Prognostic Value of Plasma and Urine Glycosaminoglycan Scores in Clear Cell Renal Cell Carcinoma.

Gatto F; Maruzzo M; Magro C; Basso U; Nielsen J
Article: SCIENTIFIC REPORTS. 2015;5:10738

Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism.

Gatto F; Miess H; Schulze A; Nielsen J
Article: CELL BIOCHEMISTRY AND FUNCTION. 2015;33(3):128-133

Breast cyst fluid heparan sulphate is distinctively N-sulphated depending on apocrine or flattened type.

Mannello F; Maccari F; Ligi D; Santi M; Gatto F; Linhardt RJ; Galeotti F; Volpi N
Article: BMC BIOINFORMATICS. 2014;15(1):408

Kiwi: a tool for integration and visualization of network topology and gene-set analysis.

Väremo L; Gatto F; Nielsen J
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Editorial comment: NATURE BIOTECHNOLOGY. 2021;39(6):654-660

Voices of biotech leaders.

Bosley K; Casebourn C; Chan P; Chen J; Chen M; Church G; Cumbers J; de Wouters T; Dewey-Hagborg H; Duportet X; Ene-Obong A; Elizondo A; Farrar J; Gates B; Gatto F; Giwa S; Godec J; Gold S; LeProust E; Lunshof J; Martucci E; Heath MM; Mellad J; Oudova V; Oxman N; Regev A; Richardson S; Scott CT; Sherkow J; Sibener L; Tarragó T; Terry S; Venter JC; Wang S; Wickramasekara S; Yadi H; Yang L; Zhao B
Preprint: 2020;medRxiv

Causal effects of senescence through intrinsic epigenetic age acceleration on age-related diseases: a Mendelian randomization study

Gatto F; Ueda P
Review: WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE. 2016;8(1):23-35

In search for symmetries in the metabolism of cancer.

Gatto F; Nielsen J
Review: BIOTECHNOLOGY JOURNAL. 2013;8(9):985-996

Genome-scale modeling of human metabolism - a systems biology approach.

Mardinoglu A; Gatto F; Nielsen J

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