Daniel Ramsköld

Publikationer
CV
Populärvetenskap och samverkan

Artiklar

Article: EMBO MOLECULAR MEDICINE. 2023;15(10):e17240

Single-cell profiling of muscle-infiltrating T cells in idiopathic inflammatory myopathies.

Argyriou A; Horuluoglu B; Galindo-Feria AS; Diaz-Boada JS; Sijbranda M; Notarnicola A; Dani L; van Vollenhoven A; Ramsköld D; Nennesmo I; Dastmalchi M; Lundberg IE; Diaz-Gallo L-M; Chemin K
Article: ANNALS OF THE RHEUMATIC DISEASES. 2022;81(8):1151-1161

Auxilin is a novel susceptibility gene for congenital heart block which directly impacts fetal heart function.

Meisgen S; Hedlund M; Ambrosi A; Folkersen L; Ottosson V; Forsberg D; Thorlacius GE; Biavati L; Strandberg L; Mofors J; Ramskold D; Ruhrmann S; Meneghel L; Nyberg W; Espinosa A; Hamilton RM; Franco-Cereceda A; Hamsten A; Olsson T; Greene L; Eriksson P; Gemzell-Danielsson K; Salomonsson S; Kuchroo VK; Herlenius E; Kockum I; Sonesson S-E; Wahren-Herlenius M
Article: PLOS ONE. 2021;16(4):e0250282

Understanding interactions between risk factors, and assessing the utility of the additive and multiplicative models through simulations.

Diaz-Gallo L-M; Brynedal B; Westerlind H; Sandberg R; Ramsköld D
Article: NATURE BIOTECHNOLOGY. 2020;38(6):708-714

Single-cell RNA counting at allele and isoform resolution using Smart-seq3.

Hagemann-Jensen M; Ziegenhain C; Chen P; Ramsköld D; Hendriks G-J; Larsson AJM; Faridani OR; Sandberg R
Article: ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY. 2019;39(7):1402-1418

Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization.

Ali Z; Mukwaya A; Biesemeier A; Ntzouni M; Ramsköld D; Giatrellis S; Mammadzada P; Cao R; Lennikov A; Marass M; Gerri C; Hildesjö C; Taylor M; Deng Q; Peebo B; Del Peso L; Kvanta A; Sandberg R; Schraermeyer U; Andre H; Steffensen JF; Lagali N; Cao Y; Kele J; Jensen LD
Article: ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY. 2019;39(7):1432-1447

Disruption of the Extracellular Matrix Progressively Impairs Central Nervous System Vascular Maturation Downstream of β-Catenin Signaling.

Jensen LD; Hot B; Ramsköld D; Germano RFV; Yokota C; Giatrellis S; Lauschke VM; Hubmacher D; Li MX; Hupe M; Arnold TD; Sandberg R; Frisén J; Trusohamn M; Martowicz A; Wisniewska-Kruk J; Nyqvist D; Adams RH; Apte SS; Vanhollebeke B; Stenman JM; Kele J
Article: EBIOMEDICINE. 2019;40:517-527

B cell alterations during BAFF inhibition with belimumab in SLE.

Ramsköld D; Parodis I; Lakshmikanth T; Sippl N; Khademi M; Chen Y; Zickert A; Mikeš J; Achour A; Amara K; Piehl F; Brodin P; Gunnarsson I; Malmström V
Article: ARTHRITIS & RHEUMATOLOGY. 2019;71(2):196-209

Recognition of Amino Acid Motifs, Rather Than Specific Proteins, by Human Plasma Cell-Derived Monoclonal Antibodies to Posttranslationally Modified Proteins in Rheumatoid Arthritis.

Steen J; Forsström B; Sahlström P; Odowd V; Israelsson L; Krishnamurthy A; Badreh S; Mathsson Alm L; Compson J; Ramsköld D; Ndlovu W; Rapecki S; Hansson M; Titcombe PJ; Bang H; Mueller DL; Catrina AI; Grönwall C; Skriner K; Nilsson P; Lightwood D; Klareskog L; Malmström V
Article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2019;89(1):e12732

Effect of CTLA4-Ig (abatacept) treatment on T cells and B cells in peripheral blood of patients with polymyositis and dermatomyositis.

Tang Q; Ramsköld D; Krystufkova O; Mann HF; Wick C; Dastmalchi M; Lakshmikanth T; Chen Y; Mikes J; Alexanderson H; Achour A; Brodin P; Vencovsky J; Lundberg IE; Malmström V
Article: ANNALS OF THE RHEUMATIC DISEASES. 2018;77(10):1454-1462

Systematic approach demonstrates enrichment of multiple interactions between non-HLA risk variants and HLA-DRB1 risk alleles in rheumatoid arthritis.

Diaz-Gallo L-M; Ramsköld D; Shchetynsky K; Folkersen L; Chemin K; Brynedal B; Uebe S; Okada Y; Alfredsson L; Klareskog L; Padyukov L
Article: JOURNAL OF AUTOIMMUNITY. 2018;90:28-38

T cells are influenced by a long non-coding RNA in the autoimmune associated PTPN2 locus.

Houtman M; Shchetynsky K; Chemin K; Hensvold AH; Ramsköld D; Tandre K; Eloranta M-L; Rönnblom L; Uebe S; Catrina AI; Malmström V; Padyukov L
Article: EUROPEAN JOURNAL OF IMMUNOLOGY. 2018;48(4):655-669

EOMES-positive CD4+ T cells are increased in PTPN22 (1858T) risk allele carriers.

Chemin K; Ramsköld D; Diaz-Gallo L-M; Herrath J; Houtman M; Tandre K; Rönnblom L; Catrina A; Malmström V
Article: GASTROENTEROLOGY. 2018;154(4):1080-1095

Mouse Model of Alagille Syndrome and Mechanisms of Jagged1 Missense Mutations.

Andersson ER; Chivukula IV; Hankeova S; Sjöqvist M; Tsoi YL; Ramsköld D; Masek J; Elmansuri A; Hoogendoorn A; Vazquez E; Storvall H; Netušilová J; Huch M; Fischler B; Ellis E; Contreras A; Nemeth A; Chien KC; Clevers H; Sandberg R; Bryja V; Lendahl U
Article: DATA IN BRIEF. 2017;13:356-370

Immunoglobulin characteristics and RNAseq data of FcRL4+ B cells sorted from synovial fluid and tissue of patients with rheumatoid arthritis.

Amara K; Clay E; Yeo L; Ramsköld D; Spengler J; Sippl N; Cameron J; Israelsson L; Titcombe PJ; Grönwall C; Sahbudin I; Filer A; Raza K; Malmström V; Scheel-Toellner D
Article: JOURNAL OF AUTOIMMUNITY. 2017;81:34-43

B cells expressing the IgA receptor FcRL4 participate in the autoimmune response in patients with rheumatoid arthritis.

Amara K; Clay E; Yeo L; Ramsköld D; Spengler J; Sippl N; Cameron JA; Israelsson L; Titcombe PJ; Grönwall C; Sahbudin I; Filer A; Raza K; Malmström V; Scheel-Toellner D
Article: NATURE GENETICS. 2016;48(11):1430-1435

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq.

Reinius B; Mold JE; Ramsköld D; Deng Q; Johnsson P; Michaëlsson J; Frisén J; Sandberg R
Article: MOLECULAR MEDICINE. 2016;22:322-328

Integration of known DNA, RNA and protein biomarkers provides prediction of anti-TNF response in rheumatoid arthritis: results from the COMBINE study.

Folkersen L; Brynedal B; Diaz-Gallo LM; Ramsköld D; Shchetynsky K; Westerlind H; Sundström Y; Schepis D; Hensvold A; Vivar N; Eloranta M-L; Rönnblom L; Brunak S; Malmström V; Catrina A; Moerch UG; Klareskog L; Padyukov L; Berg L
Article: STEM CELL REPORTS. 2016;6(5):643-651

Loss of CSL Unlocks a Hypoxic Response and Enhanced Tumor Growth Potential in Breast Cancer Cells.

Braune E-B; Tsoi YL; Phoon YP; Landor S; Silva Cascales H; Ramsköld D; Deng Q; Lindqvist A; Lian X; Sahlgren C; Jin S-B; Lendahl U
Article: BREAST CANCER RESEARCH. 2015;17(1):109

Decoding breast cancer tissue-stroma interactions using species-specific sequencing.

Chivukula IV; Ramsköld D; Storvall H; Anderberg C; Jin S; Mamaeva V; Sahlgren C; Pietras K; Sandberg R; Lendahl U
Article: GENOME BIOLOGY. 2015;16(1):156

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution.

Sahlén P; Abdullayev I; Ramsköld D; Matskova L; Rilakovic N; Lötstedt B; Albert TJ; Lundeberg J; Sandberg R
Article: CELL STEM CELL. 2014;15(5):619-633

BMP signaling and its pSMAD1/5 target genes differentially regulate hair follicle stem cell lineages.

Genander M; Cook PJ; Ramsköld D; Keyes BE; Mertz AF; Sandberg R; Fuchs E
Article: CANCER DISCOVERY. 2014;4(4):434-451

RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma.

Chen ZX; Wallis K; Fell SM; Sobrado VR; Hemmer MC; Ramsköld D; Hellman U; Sandberg R; Kenchappa RS; Martinson T; Johnsen JI; Kogner P; Schlisio S
Article: SCIENCE. 2014;343(6167):193-196

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.

Deng Q; Ramsköld D; Reinius B; Sandberg R
Article: ONCOGENE. 2013;32(41):4892-4902

Non-canonical Notch signaling activates IL-6/JAK/STAT signaling in breast tumor cells and is controlled by p53 and IKKα/IKKβ.

Jin S; Mutvei AP; Chivukula IV; Andersson ER; Ramsköld D; Sandberg R; Lee KL; Kronqvist P; Mamaeva V; Ostling P; Mpindi J-P; Kallioniemi O; Screpanti I; Poellinger L; Sahlgren C; Lendahl U
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013;110(6):2360-2365

Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons.

Kadkhodaei B; Alvarsson A; Schintu N; Ramsköld D; Volakakis N; Joodmardi E; Yoshitake T; Kehr J; Decressac M; Björklund A; Sandberg R; Svenningsson P; Perlmann T
Article: PLOS ONE. 2013;8(1):e53822

Efficient and comprehensive representation of uniqueness for next-generation sequencing by minimum unique length analyses.

Storvall H; Ramsköld D; Sandberg R
Article: NATURE BIOTECHNOLOGY. 2012;30(8):777-782

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Article: METHODS IN MOLECULAR BIOLOGY. 2012;802:259-274

How to analyze gene expression using RNA-sequencing data.

Ramsköld D; Kavak E; Sandberg R
Article: GENES & DEVELOPMENT. 2011;25(23):2453-2464

Sequentially acting Sox transcription factors in neural lineage development.

Bergsland M; Ramsköld D; Zaouter C; Klum S; Sandberg R; Muhr J
Article: PLOS COMPUTATIONAL BIOLOGY. 2009;5(12):e1000598

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data.

Ramsköld D; Wang ET; Burge CB; Sandberg R
Article: RNA. 2008;14(12):2462-2464

The RNA WikiProject: community annotation of RNA families.

Daub J; Gardner PP; Tate J; Ramsköld D; Manske M; Scott WG; Weinberg Z; Griffiths-Jones S; Bateman A
Visa fler

Alla övriga publikationer

Corrigendum: NATURE BIOTECHNOLOGY. 2020;38(3):374

Author Correction: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Review: AUTOIMMUNITY REVIEWS. 2017;16(4):343-351

Smoking and pre-existing organ damage reduce the efficacy of belimumab in systemic lupus erythematosus.

Parodis I; Sjöwall C; Jönsen A; Ramsköld D; Zickert A; Frodlund M; Sohrabian A; Arnaud L; Rönnelid J; Malmström V; Bengtsson AA; Gunnarsson I
KI thesis / dissertation: 2014

Progression of RNA-sequencing to single-cell applications

Ramsköld, Daniel

Anställningar

Forskningsspecialist, Cell- och molekylärbiologi, Karolinska Institutet, 2022-

Examina och utbildning

Medicine Doktorsexamen, Institutionen för cell- och molekylärbiologi, Karolinska Institutet, 2014

Artiklar

Alla övriga publikationer

Anställningar

Examina och utbildning

Nyheter från KI

Kalenderhändelser från KI